MolNFT v1 · #78435 · protein
Crystal structure of LRP6-E3E4
3S8Z · Low-density lipoprotein receptor-related protein 6: “Crystal structure of LRP6-E3E4”. X-ray diffraction, 1 ligand (NAG), 4 pockets (best druggability 0.81). MolNFT v1 #78435 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 3S8Z
- Type
- protein
- Length
- 606 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Low-density lipoprotein receptor-related protein 6
- UniProt
- O75581
- Ligands
- NAG
- Pockets
- 4 · best druggability 0.81
Structure
x-ray diffraction · 1 distinct chain · 3% helix, 48% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Low-density lipoprotein receptor-related protein 6 | protein | 606 | 3% helix, 48% strand | O75581 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 5 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 276 | 0.81 | 0.93 | 39 | empty |
| 2 | 560 | 0.79 | 0.86 | 62 | empty |
| 3 | 567 | 0.68 | 0.78 | 73 | empty |
| 4 | 169 | 0.48 | 0.77 | 25 | empty |
Modifications
Observed in the structure: 6 disulfide, 4 glycan (disulfide, N-glycosylation).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O75581
- Elsewhere: RCSB PDB 3S8Z · PDBe 3S8Z · UniProt O75581
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