MolNFT v1 · #78160 · protein
CDK2 in complex with inhibitor rc-1-138
3S0O · Cyclin-dependent kinase 2: “CDK2 in complex with inhibitor rc-1-138”. X-ray diffraction, 1 ligand (50Z), 3 pockets (best druggability 0.73). MolNFT v1 #78160 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 3S0O
- Type
- protein
- Length
- 293 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cyclin-dependent kinase 2
- EC
- 2.7.11.22
- UniProt
- P24941
- Ligands
- 50Z
- Pockets
- 3 · best druggability 0.73
Structure
x-ray diffraction · 1 distinct chain · 33% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cyclin-dependent kinase 2 (EC 2.7.11.22) | protein | 293 | 33% helix, 15% strand | P24941 |
Ligands and binding sites
- 50Z · [4-amino-2-(prop-2-en-1-ylamino)-1,3-thiazol-5-yl](pyridin-2-yl)methanone · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 167 | 0.73 | 0.90 | 30 | empty |
| 2 | 231 | 0.67 | 0.84 | 28 | 50Z |
| 3 | 175 | 0.55 | 0.80 | 33 | empty |
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P24941
- Elsewhere: RCSB PDB 3S0O · PDBe 3S0O · UniProt P24941
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