MolNFT v1 · #77264 · protein
CDK2 in complex with inhibitor rc-2-21
3R9N · Cyclin-dependent kinase 2: “CDK2 in complex with inhibitor rc-2-21”. X-ray diffraction, 1 ligand (Z68), 3 pockets (best druggability 0.68). MolNFT v1 #77264 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 3R9N
- Type
- protein
- Length
- 282 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cyclin-dependent kinase 2
- EC
- 2.7.11.22
- UniProt
- P24941
- Ligands
- Z68
- Pockets
- 3 · best druggability 0.68
Structure
x-ray diffraction · 1 distinct chain · 36% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cyclin-dependent kinase 2 (EC 2.7.11.22) | protein | 282 | 36% helix, 16% strand | P24941 |
Ligands and binding sites
- Z68 · [4-amino-2-(cyclohexylamino)-1,3-thiazol-5-yl](3-nitrophenyl)methanone · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 345 | 0.68 | 0.81 | 43 | Z68 |
| 2 | 77 | 0.40 | 0.78 | 15 | empty |
| 3 | 79 | 0.35 | 0.75 | 23 | empty |
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P24941
- Elsewhere: RCSB PDB 3R9N · PDBe 3R9N · UniProt P24941
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.