MolNFT v1 · #76640 · protein
Crystal structure of S. officinalis PLC21
3QR0 · Phospholipase C-beta (plc-beta): “Crystal structure of S. officinalis PLC21”. X-ray diffraction, 1 ligand (CA), 14 pockets (best druggability 0.70). MolNFT v1 #76640 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 3QR0
- Type
- protein
- Length
- 781 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Phospholipase C-beta (plc-beta)
- Ligands
- CA
- Pockets
- 14 · best druggability 0.70
Structure
x-ray diffraction · 1 distinct chain · 35% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Phospholipase C-beta (plc-beta) | protein | 781 | 35% helix, 22% strand | — |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
14 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 464 | 0.70 | 0.81 | 61 | GOL |
| 2 | 213 | 0.66 | 0.84 | 28 | empty |
| 3 | 413 | 0.65 | 0.78 | 43 | GOL |
| 4 | 279 | 0.64 | 0.81 | 38 | GOL |
| 5 | 394 | 0.64 | 0.78 | 35 | empty |
Compared structures
- 3QR0 · Crystal Structure of S. officinalis PLC21 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 3QR0 · PDBe 3QR0
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