MolNFT v1 · #7583 · protein

Bacteriophage ga protein capsid

1GAV: “Bacteriophage ga protein capsid”. X-ray diffraction, 20 pockets (best druggability 0.69). MolNFT v1 #7583 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1GAV
Type: protein
Length: 5,805 residues
Chains: 45
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Bacteriophage ga protein capsid
UniProt: P07234
Pockets: 20 · best druggability 0.69

Structure

x-ray diffraction · 1 distinct chain · 21% helix, 48% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, 1, 2, 3, 4, 5, 6, 7, 8, 9, 0, a, b, c, d, e, f, g, h, i	Bacteriophage ga protein capsid	protein	129	21% helix, 48% strand	P07234

Pockets

20 pockets found on a 1 Å grid, 12 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	735	0.69	0.76	75	empty
2	722	0.69	0.76	71	empty
3	668	0.68	0.76	68	empty
4	694	0.68	0.76	65	empty
5	736	0.68	0.75	75	empty

Interfaces

132 interfaces between chains.

6–g · 3411 Å² buried · 44 hydrogen bonds · protein-protein
N–Y · 3405 Å² buried · 44 hydrogen bonds · protein-protein
K–M · 3403 Å² buried · 44 hydrogen bonds · protein-protein
H–5 · 3402 Å² buried · 44 hydrogen bonds · protein-protein
B–J · 3401 Å² buried · 44 hydrogen bonds · protein-protein

Compared structures

1GAV · Bacteriophage ga protein capsid · the same entry in another collection · chain B against B, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P07234
Elsewhere: RCSB PDB 1GAV · PDBe 1GAV · UniProt P07234

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