Research workbench
Bacteriophage ga protein capsid
Analyse Bacteriophage ga protein capsid in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1GAV
- Type
- protein
- Length
- 5,805 residues
- Chains
- 45
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Bacteriophage ga protein capsid
- UniProt
- P07234
- Pockets
- 20 · best druggability 0.69
Structure
x-ray diffraction · 1 distinct chain · 21% helix, 48% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, 1, 2, 3, 4, 5, 6, 7, 8, 9, 0, a, b, c, d, e, f, g, h, i | Bacteriophage ga protein capsid | protein | 129 | 21% helix, 48% strand | P07234 |
Pockets
20 pockets found on a 1 Å grid, 12 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 735 | 0.69 | 0.76 | 75 | empty |
| 2 | 722 | 0.69 | 0.76 | 71 | empty |
| 3 | 668 | 0.68 | 0.76 | 68 | empty |
| 4 | 694 | 0.68 | 0.76 | 65 | empty |
| 5 | 736 | 0.68 | 0.75 | 75 | empty |
Interfaces
132 interfaces between chains.
- 6–g · 3411 Ų buried · 44 hydrogen bonds · protein-protein
- N–Y · 3405 Ų buried · 44 hydrogen bonds · protein-protein
- K–M · 3403 Ų buried · 44 hydrogen bonds · protein-protein
- H–5 · 3402 Ų buried · 44 hydrogen bonds · protein-protein
- B–J · 3401 Ų buried · 44 hydrogen bonds · protein-protein
Compared structures
- 1GAV · Bacteriophage ga protein capsid · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P07234
- Elsewhere: RCSB PDB 1GAV · PDBe 1GAV · UniProt P07234
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