MolNFT v1 · #75021 · protein
Crystal structure of putative P-nitrophenyl phosphatase from bacillus subtilis
3PDW · Uncharacterized hydrolase yutf: “Crystal structure of putative P-nitrophenyl phosphatase from bacillus subtilis”. X-ray diffraction, 1 pocket (best druggability 0.58). MolNFT v1 #75021 on GenesisL1: 3D structure, binding sites and…
- PDB
- 3PDW
- Type
- protein
- Length
- 257 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized hydrolase yutf
- UniProt
- O32125
- Pockets
- 1 · best druggability 0.58
Structure
x-ray diffraction · 1 distinct chain · 43% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Uncharacterized hydrolase yutf | protein | 257 | 43% helix, 20% strand | O32125 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 316 | 0.58 | 0.77 | 34 | GOL |
Compared structures
- 3PDW · Crystal structure of putative p-nitrophenyl phosphatase from Bacillus subtilis · the same entry in another collection · chain A against A, TM-score 1.00
- O32125 · AlphaFold monomer V2.0 prediction for acid sugar phosphatase (O32125) · a predicted model of the same protein · chain A against A, TM-score 0.93
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O32125
- Elsewhere: RCSB PDB 3PDW · PDBe 3PDW · UniProt O32125
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