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MolNFT v1 · #74643 · protein

Insulin fibrillation is the janus face of induced fit. a chiaral clamp stabilizes the native state at the expense of activity

3P2X: “Insulin fibrillation is the janus face of induced fit. a chiaral clamp stabilizes the native state at the…”. X-ray diffraction, 3 ligands (IPH, ZN, CL). MolNFT v1 #74643 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
3P2X
Type
protein
Length
102 residues
Chains
4
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Insulin
UniProt
P01308
Ligands
IPH, ZN, CL

Structure

x-ray diffraction · 2 distinct chains · 49% helix, 8% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
A, CInsulinprotein2152% helix, 5% strandP01308
B, DInsulinprotein3047% helix, 10% strandP01308

Ligands and binding sites

  • IPH · Phenol · ligand · chains C, D
  • ZN · Zinc ion · metal · 2 copies · chains B, D
  • CL · Chloride ion · ion · 2 copies · chains B, D

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

5 interfaces between chains.

  • A–B · 828 Ų buried · 10 hydrogen bonds · protein-protein
  • C–D · 622 Ų buried · 4 hydrogen bonds · protein-protein
  • B–D · 613 Ų buried · 10 hydrogen bonds · protein-protein
  • A–D · 70 Ų buried · 1 hydrogen bond · protein-protein
  • B–C · 22 Ų buried · 0 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 6 disulfide, 2 d-amino (disulfide, D-amino acid).

Compared structures

  • 3P2X · Insulin fibrillation is the Janus face of induced fit. A chiaral clamp stabilizes the… · the same entry in another collection · chain A against A, TM-score 1.00

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