MolNFT v1 · #74610 · protein

Crystal structure of rab gdi from plasmodium falciparum, PFL2060C

3P1W · Rabgdi protein: “Crystal structure of rab gdi from plasmodium falciparum, PFL2060C”. X-ray diffraction, 6 pockets (best druggability 0.55). MolNFT v1 #74610 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 3P1W
Type: protein
Length: 442 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Rabgdi protein
UniProt: Q8I501
Pockets: 6 · best druggability 0.55

Structure

x-ray diffraction · 1 distinct chain · 34% helix, 26% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Rabgdi protein	protein	442	34% helix, 26% strand	Q8I501

Pockets

6 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	149	0.55	0.81	36	empty
2	121	0.53	0.82	22	empty
3	126	0.43	0.76	25	empty
4	51	0.41	0.82	14	empty
5	64	0.34	0.77	20	empty

Compared structures

3P1W · Crystal Structure of RAB GDI from Plasmodium Falciparum, PFL2060c · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8I501
Elsewhere: RCSB PDB 3P1W · PDBe 3P1W · UniProt Q8I501

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