Research workbench
Crystal structure of rab gdi from plasmodium falciparum, PFL2060C
Analyse Crystal structure of rab gdi from plasmodium falciparum, PFL2060C in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3P1W
- Type
- protein
- Length
- 442 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Rabgdi protein
- UniProt
- Q8I501
- Pockets
- 6 · best druggability 0.55
Structure
x-ray diffraction · 1 distinct chain · 34% helix, 26% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Rabgdi protein | protein | 442 | 34% helix, 26% strand | Q8I501 |
Pockets
6 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 149 | 0.55 | 0.81 | 36 | empty |
| 2 | 121 | 0.53 | 0.82 | 22 | empty |
| 3 | 126 | 0.43 | 0.76 | 25 | empty |
| 4 | 51 | 0.41 | 0.82 | 14 | empty |
| 5 | 64 | 0.34 | 0.77 | 20 | empty |
Compared structures
- 3P1W · Crystal Structure of RAB GDI from Plasmodium Falciparum, PFL2060c · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8I501
- Elsewhere: RCSB PDB 3P1W · PDBe 3P1W · UniProt Q8I501
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