MolNFT v1 · #74566 · protein

Structure of baculovirus sulfhydryl oxidase AC92

3P0K: “Structure of baculovirus sulfhydryl oxidase AC92”. X-ray diffraction, 1 ligand (FAD), 5 pockets (best druggability 0.61). MolNFT v1 #74566 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 3P0K
Type: protein
Length: 258 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Sulfhydryl oxidase
EC: 1.8.3.2
UniProt: P41480
Ligands: FAD
Pockets: 5 · best druggability 0.61

Structure

x-ray diffraction · 1 distinct chain · 68% helix, 2% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Sulfhydryl oxidase (EC 1.8.3.2)	protein	258	68% helix, 2% strand	P41480

Ligands and binding sites

FAD · Flavin-adenine dinucleotide · ligand · chains A
IMD · Imidazole · additive · chains A
ACT · Acetate ion · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	196	0.61	0.82	33	FAD
2	71	0.52	0.85	19	empty
3	118	0.47	0.79	19	empty
4	88	0.42	0.78	18	empty
5	91	0.37	0.75	18	ACT

Modifications

Observed in the structure: 1 disulfide (disulfide).

Compared structures

3P0K · Structure of Baculovirus Sulfhydryl Oxidase Ac92 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P41480
Elsewhere: RCSB PDB 3P0K · PDBe 3P0K · UniProt P41480

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