MolNFT v1 · #74554 · protein
Crystal structure of tellina virus 1 VP4 protease in the form of an intra-MOLECULAR(CIS)ACYL-enzyme complex.
3P06 · VP4 protein: “Crystal structure of tellina virus 1 VP4 protease in the form of an intra-MOLECULAR(CIS)ACYL-enzyme complex.”. X-ray diffraction, 3 ligands (URE, SO4, CL), 1 pocket (best druggability 0.37). MolNFT v1 #74554 on…
- PDB
- 3P06
- Type
- protein
- Length
- 194 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- VP4 protein
- EC
- 3.4.21.115
- UniProt
- Q2PBR5
- Ligands
- URE, SO4, CL
- Pockets
- 1 · best druggability 0.37
Structure
x-ray diffraction · 1 distinct chain · 18% helix, 35% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | VP4 protein (EC 3.4.21.115) | protein | 194 | 18% helix, 35% strand | Q2PBR5 |
Ligands and binding sites
- URE · Urea · ligand · chains A
- SO4 · Sulfate ion · ion · chains A
- CL · Chloride ion · ion · chains A
- GOL · Glycerol · additive · 3 copies · chains A
- BME · Beta-mercaptoethanol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 70 | 0.37 | 0.77 | 18 | SO4 |
Modifications
Observed in the structure: 5 modified (engineered).
Compared structures
- 3P06 · Crystal structure of Tellina virus 1 VP4 protease in the form of an… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q2PBR5
- Elsewhere: RCSB PDB 3P06 · PDBe 3P06 · UniProt Q2PBR5
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.