MolNFT v1 · #74038 · protein

Crystal structure of protein GBS0355 from streptococcus agalactiae, northeast structural genomics consortium target SAR127

3OKZ · Putative uncharacterized protein GBS0355: “Crystal structure of protein GBS0355 from streptococcus agalactiae, northeast structural genomics consortium…”. X-ray diffraction, 5 pockets (best druggability 0.87). MolNFT v1 #74038 on…

PDB: 3OKZ
Type: protein
Length: 592 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Putative uncharacterized protein GBS0355
UniProt: Q8E703
Pockets: 5 · best druggability 0.87

Structure

x-ray diffraction · 2 distinct chains · 32% helix, 23% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Putative uncharacterized protein GBS0355	protein	297	32% helix, 25% strand	Q8E703
B	Putative uncharacterized protein GBS0355	protein	295	31% helix, 22% strand	Q8E703

Pockets

5 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	625	0.87	0.91	54	empty
2	577	0.86	0.90	55	empty
3	238	0.62	0.82	38	empty
4	166	0.45	0.76	26	empty
5	152	0.44	0.76	27	empty

Interfaces

1 interface between chains.

A–B · 904 Å² buried · 5 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 18 modified (engineered).

Compared structures

3OKZ · Crystal Structure of protein gbs0355 from Streptococcus agalactiae, Northeast Structural… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8E703
Elsewhere: RCSB PDB 3OKZ · PDBe 3OKZ · UniProt Q8E703

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