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Crystal structure of protein GBS0355 from streptococcus agalactiae, northeast structural genomics consortium target SAR127
Analyse Crystal structure of protein GBS0355 from streptococcus agalactiae, northeast… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3OKZ
- Type
- protein
- Length
- 592 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative uncharacterized protein GBS0355
- UniProt
- Q8E703
- Pockets
- 5 · best druggability 0.87
Structure
x-ray diffraction · 2 distinct chains · 32% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative uncharacterized protein GBS0355 | protein | 297 | 32% helix, 25% strand | Q8E703 |
| B | Putative uncharacterized protein GBS0355 | protein | 295 | 31% helix, 22% strand | Q8E703 |
Pockets
5 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 625 | 0.87 | 0.91 | 54 | empty |
| 2 | 577 | 0.86 | 0.90 | 55 | empty |
| 3 | 238 | 0.62 | 0.82 | 38 | empty |
| 4 | 166 | 0.45 | 0.76 | 26 | empty |
| 5 | 152 | 0.44 | 0.76 | 27 | empty |
Interfaces
1 interface between chains.
- A–B · 904 Ų buried · 5 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 18 modified (engineered).
Compared structures
- 3OKZ · Crystal Structure of protein gbs0355 from Streptococcus agalactiae, Northeast Structural… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8E703
- Elsewhere: RCSB PDB 3OKZ · PDBe 3OKZ · UniProt Q8E703
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