MolNFT v1 · #73818 · protein

Discovery of cell-active phenyl-imidazole PIN1 inhibitors by structure-guided fragment evolution

3ODK · Peptidyl-prolyl cis-trans isomerase nima-interacting 1: “Discovery of cell-active phenyl-imidazole PIN1 inhibitors by structure-guided fragment evolution”. X-ray diffraction, 1 ligand (ODK), 1 pocket (best druggability 0.35). MolNFT…

PDB: 3ODK
Type: protein
Length: 145 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Peptidyl-prolyl cis-trans isomerase nima-interacting 1
EC: 5.2.1.8
UniProt: Q13526
Ligands: ODK
Pockets: 1 · best druggability 0.35

Structure

x-ray diffraction · 1 distinct chain · 26% helix, 26% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Peptidyl-prolyl cis-trans isomerase nima-interacting 1 (EC 5.2.1.8)	protein	145	26% helix, 26% strand	Q13526

Ligands and binding sites

ODK · 3-pyridin-2-yl-1H-pyrazole-5-carboxylic acid · ligand · chains A
PE4 · 2-{2-[2-(2-{2-[2-(2-ethoxy-ethoxy)-ethoxy]-ethoxy}-ethoxy)-ethoxy]-ethoxy}-ethanol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	88	0.35	0.74	15	ODK

Compared structures

3ODK · Discovery of cell-active phenyl-imidazole Pin1 inhibitors by structure-guided fragment… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q13526
Elsewhere: RCSB PDB 3ODK · PDBe 3ODK · UniProt Q13526

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