MolNFT v1 · #73373 · protein

Quaternary complex structure of gluconate 5-dehydrogenase from streptococcus suis type 2

3O03 · Dehydrogenase with different specificities: “Quaternary complex structure of gluconate 5-dehydrogenase from streptococcus suis type 2”. X-ray diffraction, 3 ligands (NAP, GCO, CA), 1 pocket (best druggability 0.69). MolNFT v1 #73373…

PDB: 3O03
Type: protein
Length: 254 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Dehydrogenase with different specificities
EC: 1.1.1.69
UniProt: A4VVQ2
Ligands: NAP, GCO, CA
Pockets: 1 · best druggability 0.69

Structure

x-ray diffraction · 1 distinct chain · 51% helix, 15% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Dehydrogenase with different specificities (EC 1.1.1.69)	protein	254	51% helix, 15% strand	A4VVQ2

Ligands and binding sites

NAP · Nadp nicotinamide-adenine-dinucleotide phosphate · ligand · chains A
GCO · D-gluconic acid · ligand · chains A
CA · Calcium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	596	0.69	0.78	51	CA, NAP, GCO

Compared structures

3O03 · Quaternary complex structure of gluconate 5-dehydrogenase from streptococcus suis type 2 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A4VVQ2
Elsewhere: RCSB PDB 3O03 · PDBe 3O03 · UniProt A4VVQ2

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