MolNFT v1 · #72804 · protein
Crystal structure of the yslb protein from bacillus subtilis. northeast structural genomics consortium target SR460.
3NJC: “Crystal structure of the yslb protein from bacillus subtilis. northeast structural genomics consortium target…”. X-ray diffraction, 4 pockets (best druggability 0.37). MolNFT v1 #72804 on GenesisL1: 3D structure, binding sites and…
- PDB
- 3NJC
- Type
- protein
- Length
- 299 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Yslb protein
- UniProt
- P42955
- Pockets
- 4 · best druggability 0.37
Structure
x-ray diffraction · 2 distinct chains · 51% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Yslb protein | protein | 153 | 50% helix, 24% strand | P42955 |
| B | Yslb protein | protein | 146 | 52% helix, 22% strand | P42955 |
Pockets
4 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 69 | 0.37 | 0.78 | 19 | empty |
| 2 | 101 | 0.36 | 0.74 | 18 | empty |
| 3 | 58 | 0.36 | 0.79 | 16 | empty |
| 4 | 88 | 0.33 | 0.73 | 15 | empty |
Interfaces
1 interface between chains.
- A–B · 2236 Ų buried · 15 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 13 modified (engineered).
Compared structures
- 3NJC · Crystal structure of the yslB protein from Bacillus subtilis. Northeast Structural… · the same entry in another collection · chain A against A, TM-score 1.00
- P42955 · AlphaFold monomer V2.0 prediction for uncharacterized protein yslb (P42955) · a predicted model of the same protein · chain B against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P42955
- Elsewhere: RCSB PDB 3NJC · PDBe 3NJC · UniProt P42955
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