Research workbench
Crystal structure of the yslb protein from bacillus subtilis. northeast structural genomics consortium target SR460.
Analyse Crystal structure of the yslb protein from bacillus subtilis. northeast… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3NJC
- Type
- protein
- Length
- 299 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Yslb protein
- UniProt
- P42955
- Pockets
- 4 · best druggability 0.37
Structure
x-ray diffraction · 2 distinct chains · 51% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Yslb protein | protein | 153 | 50% helix, 24% strand | P42955 |
| B | Yslb protein | protein | 146 | 52% helix, 22% strand | P42955 |
Pockets
4 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 69 | 0.37 | 0.78 | 19 | empty |
| 2 | 101 | 0.36 | 0.74 | 18 | empty |
| 3 | 58 | 0.36 | 0.79 | 16 | empty |
| 4 | 88 | 0.33 | 0.73 | 15 | empty |
Interfaces
1 interface between chains.
- A–B · 2236 Ų buried · 15 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 13 modified (engineered).
Compared structures
- 3NJC · Crystal structure of the yslB protein from Bacillus subtilis. Northeast Structural… · the same entry in another collection · chain A against A, TM-score 1.00
- P42955 · AlphaFold monomer V2.0 prediction for uncharacterized protein yslb (P42955) · a predicted model of the same protein · chain B against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P42955
- Elsewhere: RCSB PDB 3NJC · PDBe 3NJC · UniProt P42955
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