MolNFT v1 · #72654 · protein
MPLUM-TTN
3NF0 · Fluorescent protein plum: “MPLUM-TTN”. X-ray diffraction, 2 ligands (MLT, CH6), 1 pocket (best druggability 0.72). MolNFT v1 #72654 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 3NF0
- Type
- protein
- Length
- 217 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Fluorescent protein plum
- UniProt
- Q5S3G7
- Ligands
- MLT, CH6
- Pockets
- 1 · best druggability 0.72
Structure
x-ray diffraction · 1 distinct chain · 3% helix, 57% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Fluorescent protein plum | protein | 217 | 3% helix, 57% strand | Q5S3G7 |
Ligands and binding sites
- MLT · D-malate · ligand · 3 copies · chains A
- CH6 · {(4Z)-2-[(1S)-1-amino-3-(methylsulfanyl)propyl]-4-[(4-hydroxyphenyl)methylidene]-5-oxo-4,5-dihydro-1H-imidazol-1-yl}acetic acid · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 72 | 0.72 | 0.97 | 21 | CH6 |
Modifications
Observed in the structure: 2 cofactor (chromophore).
Compared structures
- 3NF0 · mPlum-TTN · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5S3G7
- Elsewhere: RCSB PDB 3NF0 · PDBe 3NF0 · UniProt Q5S3G7
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