MolNFT v1 · #72651 · protein

V30M mutant human transthyretin (ttr) complexed with gc-24 (V30M:GC- 24)

3NEX: “V30M mutant human transthyretin (ttr) complexed with gc-24 (V30M:GC- 24)”. X-ray diffraction, 1 ligand (G24), 2 pockets (best druggability 0.37). MolNFT v1 #72651 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 3NEX
Type: protein
Length: 232 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Transthyretin
UniProt: P02766
Ligands: G24
Pockets: 2 · best druggability 0.37

Structure

x-ray diffraction · 1 distinct chain · 6% helix, 51% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Transthyretin	protein	116	6% helix, 51% strand	P02766

Ligands and binding sites

G24 · [4-(3-benzyl-4-hydroxybenzyl)-3,5-dimethylphenoxy]acetic acid · ligand · 2 copies · chains A, B
GOL · Glycerol · additive · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	97	0.37	0.75	15	empty
2	82	0.36	0.76	16	empty

Interfaces

1 interface between chains.

A–B · 931 Å² buried · 22 hydrogen bonds · protein-protein

Compared structures

3NEX · V30M mutant human transthyretin (TTR) complexed with GC-24 (V30M:GC-24) · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P02766
Elsewhere: RCSB PDB 3NEX · PDBe 3NEX · UniProt P02766

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