MolNFT v1 · #72529 · protein
Clitocybe nebularis ricin B-like lectin (cnl) in complex with lactose, crystallized at pH 4.4
3NBC: “Clitocybe nebularis ricin B-like lectin (cnl) in complex with lactose, crystallized at pH 4.4”. X-ray diffraction, 2 ligands (BGC, GAL), 1 pocket (best druggability 0.55). MolNFT v1 #72529 on GenesisL1: 3D structure, binding sites…
- PDB
- 3NBC
- Type
- protein
- Length
- 296 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ricin B-like lectin
- UniProt
- B2ZRS9
- Ligands
- BGC, GAL
- Pockets
- 1 · best druggability 0.55
Structure
x-ray diffraction · 1 distinct chain · 8% helix, 41% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Ricin B-like lectin | protein | 148 | 8% helix, 41% strand | B2ZRS9 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 254 | 0.55 | 0.77 | 32 | empty |
Interfaces
1 interface between chains.
- A–B · 664 Ų buried · 2 hydrogen bonds · protein-protein
Compared structures
- 3NBC · Clitocybe nebularis ricin B-like lectin (CNL) in complex with lactose, crystallized at pH… · the same entry in another collection · chain A against A, TM-score 1.00
- B2ZRS9 · AlphaFold monomer V2.0 prediction for ricin B-like lectin (B2ZRS9) · a predicted model of the same protein · chain A against A, TM-score 0.95
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B2ZRS9
- Elsewhere: RCSB PDB 3NBC · PDBe 3NBC · UniProt B2ZRS9
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