MolNFT v1 · #71838 · protein
Crystal structure of native bovine PDP1C
3MQ3 · Pyruvate dehydrogenase phosphatase 1: “Crystal structure of native bovine PDP1C”. X-ray diffraction, 1 ligand (MN), 6 pockets (best druggability 0.57). MolNFT v1 #71838 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 3MQ3
- Type
- protein
- Length
- 378 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Pyruvate dehydrogenase phosphatase 1
- EC
- 3.1.3.43
- UniProt
- P35816
- Ligands
- MN
- Pockets
- 6 · best druggability 0.57
Structure
x-ray diffraction · 1 distinct chain · 36% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Pyruvate dehydrogenase phosphatase 1 (EC 3.1.3.43) | protein | 378 | 36% helix, 24% strand | P35816 |
Ligands and binding sites
- MN · Manganese (II) ion · metal · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
6 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 70 | 0.57 | 0.88 | 24 | empty |
| 2 | 133 | 0.50 | 0.79 | 17 | empty |
| 3 | 156 | 0.49 | 0.77 | 23 | empty |
| 4 | 112 | 0.43 | 0.77 | 24 | empty |
| 5 | 80 | 0.32 | 0.74 | 17 | MN |
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P35816
- Elsewhere: RCSB PDB 3MQ3 · PDBe 3MQ3 · UniProt P35816
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