MolNFT v1 · #71397 · protein
Crystal structure of the first two rrm domains of yeast POLY(U) binding protein (PUB1)
3MD3 · Nuclear and cytoplasmic polyadenylated RNA-binding protein…: “Crystal structure of the first two rrm domains of yeast POLY(U) binding protein (PUB1)”. X-ray diffraction, 1 ligand (SO4), 1 pocket (best druggability 0.36). MolNFT v1…
- PDB
- 3MD3
- Type
- protein
- Length
- 165 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1
- UniProt
- P32588
- Ligands
- SO4
- Pockets
- 1 · best druggability 0.36
Structure
x-ray diffraction · 1 distinct chain · 25% helix, 38% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1 | protein | 165 | 25% helix, 38% strand | P32588 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 80 | 0.36 | 0.76 | 17 | empty |
Compared structures
- 3MD3 · Crystal Structure of the First Two RRM Domains of Yeast Poly(U) Binding Protein (Pub1) · the same entry in another collection · chain A against A, TM-score 1.00
- P32588 · AlphaFold monomer V2.0 prediction for nuclear and cytoplasmic polyadenylated RNA-binding… · a predicted model of the same protein · chain A against A, TM-score 0.61
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P32588
- Elsewhere: RCSB PDB 3MD3 · PDBe 3MD3 · UniProt P32588
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