Research workbench
Crystal structure of the first two rrm domains of yeast POLY(U) binding protein (PUB1)
Analyse Crystal structure of the first two rrm domains of yeast POLY(U) binding protein… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3MD3
- Type
- protein
- Length
- 165 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1
- UniProt
- P32588
- Ligands
- SO4
- Pockets
- 1 · best druggability 0.36
Structure
x-ray diffraction · 1 distinct chain · 25% helix, 38% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1 | protein | 165 | 25% helix, 38% strand | P32588 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 80 | 0.36 | 0.76 | 17 | empty |
Compared structures
- 3MD3 · Crystal Structure of the First Two RRM Domains of Yeast Poly(U) Binding Protein (Pub1) · the same entry in another collection · chain A against A, TM-score 1.00
- P32588 · AlphaFold monomer V2.0 prediction for nuclear and cytoplasmic polyadenylated RNA-binding… · a predicted model of the same protein · chain A against A, TM-score 0.61
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P32588
- Elsewhere: RCSB PDB 3MD3 · PDBe 3MD3 · UniProt P32588
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