MolNFT v1 · #71178 · protein

The crystal structure of the D307A mutant of glycoside hydrolase (family 31) from ruminococcus obeum atcc 29174

3M6D · Uncharacterized protein: “The crystal structure of the D307A mutant of glycoside hydrolase (family 31) from ruminococcus obeum atcc…”. X-ray diffraction, 13 pockets (best druggability 0.88). MolNFT v1 #71178 on GenesisL1: 3D…

PDB: 3M6D
Type: protein
Length: 1,313 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Uncharacterized protein
UniProt: A5ZY13
Pockets: 13 · best druggability 0.88

Structure

x-ray diffraction · 2 distinct chains · 27% helix, 26% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Uncharacterized protein	protein	655	28% helix, 27% strand	A5ZY13
B	Uncharacterized protein	protein	658	27% helix, 24% strand	A5ZY13

Pockets

13 pockets found on a 1 Å grid, 8 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	764	0.88	0.91	62	empty
2	576	0.70	0.79	61	empty
3	543	0.68	0.78	65	empty
4	302	0.66	0.82	36	empty
5	172	0.63	0.84	27	empty

Interfaces

1 interface between chains.

A–B · 2643 Å² buried · 36 hydrogen bonds · protein-protein

Compared structures

3M6D · The crystal structure of the d307a mutant of glycoside Hydrolase (family 31) from… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A5ZY13
Elsewhere: RCSB PDB 3M6D · PDBe 3M6D · UniProt A5ZY13

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