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The crystal structure of the D307A mutant of glycoside hydrolase (family 31) from ruminococcus obeum atcc 29174

Analyse The crystal structure of the D307A mutant of glycoside hydrolase (family 31)… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3M6D
Type: protein
Length: 1,313 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Uncharacterized protein
UniProt: A5ZY13
Pockets: 13 · best druggability 0.88

Structure

x-ray diffraction · 2 distinct chains · 27% helix, 26% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Uncharacterized protein	protein	655	28% helix, 27% strand	A5ZY13
B	Uncharacterized protein	protein	658	27% helix, 24% strand	A5ZY13

Pockets

13 pockets found on a 1 Å grid, 8 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	764	0.88	0.91	62	empty
2	576	0.70	0.79	61	empty
3	543	0.68	0.78	65	empty
4	302	0.66	0.82	36	empty
5	172	0.63	0.84	27	empty

Interfaces

1 interface between chains.

A–B · 2643 Å² buried · 36 hydrogen bonds · protein-protein

Compared structures

3M6D · The crystal structure of the d307a mutant of glycoside Hydrolase (family 31) from… · the same entry in another collection · chain A against A, TM-score 1.00

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Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A5ZY13
Elsewhere: RCSB PDB 3M6D · PDBe 3M6D · UniProt A5ZY13

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