MolNFT v1 · #70814 · protein

The crystal structure of a protein in the glycosyl hydrolase family 38 from enterococcus faecalis to 2.55A

3LVT · Glycosyl hydrolase, family 38: “The crystal structure of a protein in the glycosyl hydrolase family 38 from enterococcus faecalis to 2.55A”. X-ray diffraction, 1 ligand (CA), 9 pockets (best druggability 0.81). MolNFT v1 #70814 on…

PDB: 3LVT
Type: protein
Length: 833 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Glycosyl hydrolase, family 38
UniProt: Q834E8
Ligands: CA
Pockets: 9 · best druggability 0.81

Structure

x-ray diffraction · 1 distinct chain · 27% helix, 34% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Glycosyl hydrolase, family 38	protein	833	27% helix, 34% strand	Q834E8

Ligands and binding sites

CA · Calcium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

9 pockets found on a 1 Å grid, 6 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	175	0.81	0.96	30	empty
2	981	0.78	0.80	86	empty
3	90	0.63	0.89	19	empty
4	340	0.60	0.77	46	empty
5	149	0.55	0.81	28	empty

Modifications

Observed in the structure: 19 modified, 1 disulfide (engineered, disulfide).

Compared structures

3LVT · The Crystal Structure of a Protein in the Glycosyl Hydrolase Family 38 from Enterococcus… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q834E8
Elsewhere: RCSB PDB 3LVT · PDBe 3LVT · UniProt Q834E8

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