MolNFT v1 · #70782 · protein
Crystal structure of fatty acid binding degv family protein SAG1342 from streptococcus agalactiae
3LUP: “Crystal structure of fatty acid binding degv family protein SAG1342 from streptococcus agalactiae”. X-ray diffraction, 1 ligand (ELA), 2 pockets (best druggability 0.76). MolNFT v1 #70782 on GenesisL1: 3D structure, binding sites…
- PDB
- 3LUP
- Type
- protein
- Length
- 283 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Degv family protein
- UniProt
- Q8DYY0
- Ligands
- ELA
- Pockets
- 2 · best druggability 0.76
Structure
x-ray diffraction · 1 distinct chain · 41% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Degv family protein | protein | 283 | 41% helix, 20% strand | Q8DYY0 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 111 | 0.76 | 0.95 | 30 | ELA |
| 2 | 118 | 0.41 | 0.75 | 19 | empty |
Modifications
Observed in the structure: 4 modified (engineered).
Compared structures
- 3LUP · Crystal structure of fatty acid binding DegV family protein SAG1342 from Streptococcus… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8DYY0
- Elsewhere: RCSB PDB 3LUP · PDBe 3LUP · UniProt Q8DYY0
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