Research workbench
Crystal structure of fatty acid binding degv family protein SAG1342 from streptococcus agalactiae
Analyse Crystal structure of fatty acid binding degv family protein SAG1342 from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3LUP
- Type
- protein
- Length
- 283 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Degv family protein
- UniProt
- Q8DYY0
- Ligands
- ELA
- Pockets
- 2 · best druggability 0.76
Structure
x-ray diffraction · 1 distinct chain · 41% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Degv family protein | protein | 283 | 41% helix, 20% strand | Q8DYY0 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 111 | 0.76 | 0.95 | 30 | ELA |
| 2 | 118 | 0.41 | 0.75 | 19 | empty |
Modifications
Observed in the structure: 4 modified (engineered).
Compared structures
- 3LUP · Crystal structure of fatty acid binding DegV family protein SAG1342 from Streptococcus… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8DYY0
- Elsewhere: RCSB PDB 3LUP · PDBe 3LUP · UniProt Q8DYY0
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