MolNFT v1 · #70276 · protein
Crystal structure of CDK2 with SAR60, an aminoindazole type inhibitor
3LFQ · Cell division protein kinase 2: “Crystal structure of CDK2 with SAR60, an aminoindazole type inhibitor”. X-ray diffraction, 1 ligand (A28), 2 pockets (best druggability 0.73). MolNFT v1 #70276 on GenesisL1: 3D structure, binding…
- PDB
- 3LFQ
- Type
- protein
- Length
- 289 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cell division protein kinase 2
- EC
- 2.7.11.22
- UniProt
- P24941
- Ligands
- A28
- Pockets
- 2 · best druggability 0.73
Structure
x-ray diffraction · 1 distinct chain · 35% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cell division protein kinase 2 (EC 2.7.11.22) | protein | 289 | 35% helix, 17% strand | P24941 |
Ligands and binding sites
- A28 · N-(6,7-difluoro-5-phenyl-1H-indazol-3-yl)butanamide · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 370 | 0.73 | 0.84 | 45 | A28 |
| 2 | 52 | 0.28 | 0.74 | 12 | empty |
Compared structures
- 3LFQ · Crystal structure of CDK2 with SAR60, an aminoindazole type inhibitor · the same entry in another collection · chain A against A, TM-score 1.00
- P24941 · AlphaFold monomer V2.0 prediction for cyclin-dependent kinase 2 (P24941) · a predicted model of the same protein · chain A against A, TM-score 0.94
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P24941
- Elsewhere: RCSB PDB 3LFQ · PDBe 3LFQ · UniProt P24941
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.