MolNFT v1 · #70250 · protein
Crystal structure of a halotolerant bacterial beta-lactamase
3LEZ: “Crystal structure of a halotolerant bacterial beta-lactamase”. X-ray diffraction, 2 ligands (CA, CL), 1 pocket (best druggability 0.24). MolNFT v1 #70250 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 3LEZ
- Type
- protein
- Length
- 260 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Beta-lactamase
- EC
- 3.5.2.6
- UniProt
- Q8EMP8
- Ligands
- CA, CL
- Pockets
- 1 · best druggability 0.24
Structure
x-ray diffraction · 1 distinct chain · 43% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Beta-lactamase (EC 3.5.2.6) | protein | 260 | 43% helix, 19% strand | Q8EMP8 |
Ligands and binding sites
- CA · Calcium ion · metal · 8 copies · chains A
- CL · Chloride ion · ion · chains A
- EPE · 4-(2-hydroxyethyl)-1-piperazine ethanesulfonic acid · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 56 | 0.24 | 0.72 | 14 | EPE |
Compared structures
- 3LEZ · Crystal structure of a halotolerant bacterial beta-lactamase · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8EMP8
- Elsewhere: RCSB PDB 3LEZ · PDBe 3LEZ · UniProt Q8EMP8
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