MolNFT v1 · #702 · protein
Serratia protease in complex with inhibitor
1AF0: “Serratia protease in complex with inhibitor”. X-ray diffraction, 3 ligands (0Z9, CA, ZN), 3 pockets (best druggability 0.49). MolNFT v1 #702 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1AF0
- Type
- protein
- Length
- 470 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Serratia protease
- EC
- 3.4.24.40
- UniProt
- P23694
- Ligands
- 0Z9, CA, ZN
- Pockets
- 3 · best druggability 0.49
Structure
x-ray diffraction · 1 distinct chain · 18% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Serratia protease (EC 3.4.24.40) | protein | 470 | 18% helix, 24% strand | P23694 |
Ligands and binding sites
- 0Z9 · N-[(benzyloxy)carbonyl]-L-leucyl-N-hydroxy-L-alaninamide · ligand · chains A
- CA · Calcium ion · metal · 7 copies · chains A
- ZN · Zinc ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 191 | 0.49 | 0.76 | 30 | 0Z9 |
| 2 | 132 | 0.48 | 0.79 | 20 | empty |
| 3 | 109 | 0.40 | 0.75 | 19 | empty |
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P23694
- Elsewhere: RCSB PDB 1AF0 · PDBe 1AF0 · UniProt P23694
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