MolNFT v1 · #70188 · protein

Crystal structure of the LIN0431 protein from listeria innocua, northeast structural genomics consortium target LKR112

3LD7: “Crystal structure of the LIN0431 protein from listeria innocua, northeast structural genomics consortium…”. X-ray diffraction, 3 pockets (best druggability 0.43). MolNFT v1 #70188 on GenesisL1: 3D structure, binding sites and…

PDB: 3LD7
Type: protein
Length: 261 residues
Chains: 3
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: LIN0431 protein
UniProt: Q92EM7
Pockets: 3 · best druggability 0.43

Structure

x-ray diffraction · 2 distinct chains · 6% helix, 55% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	LIN0431 protein	protein	87	6% helix, 55% strand	Q92EM7
B, C	LIN0431 protein	protein	87	6% helix, 54% strand	Q92EM7

Pockets

3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	91	0.43	0.79	20	empty
2	98	0.35	0.74	26	empty
3	55	0.31	0.76	14	empty

Interfaces

3 interfaces between chains.

A–C · 515 Å² buried · 8 hydrogen bonds · protein-protein
A–B · 251 Å² buried · 3 hydrogen bonds · protein-protein
B–C · 111 Å² buried · 0 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 6 modified (engineered).

Compared structures

3LD7 · Crystal structure of the Lin0431 protein from Listeria innocua, Northeast Structural… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q92EM7
Elsewhere: RCSB PDB 3LD7 · PDBe 3LD7 · UniProt Q92EM7

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