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Crystal structure of the LIN0431 protein from listeria innocua, northeast structural genomics consortium target LKR112

Analyse Crystal structure of the LIN0431 protein from listeria innocua, northeast… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3LD7
Type: protein
Length: 261 residues
Chains: 3
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: LIN0431 protein
UniProt: Q92EM7
Pockets: 3 · best druggability 0.43

Structure

x-ray diffraction · 2 distinct chains · 6% helix, 55% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	LIN0431 protein	protein	87	6% helix, 55% strand	Q92EM7
B, C	LIN0431 protein	protein	87	6% helix, 54% strand	Q92EM7

Pockets

3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	91	0.43	0.79	20	empty
2	98	0.35	0.74	26	empty
3	55	0.31	0.76	14	empty

Interfaces

3 interfaces between chains.

A–C · 515 Å² buried · 8 hydrogen bonds · protein-protein
A–B · 251 Å² buried · 3 hydrogen bonds · protein-protein
B–C · 111 Å² buried · 0 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 6 modified (engineered).

Compared structures

3LD7 · Crystal structure of the Lin0431 protein from Listeria innocua, Northeast Structural… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q92EM7
Elsewhere: RCSB PDB 3LD7 · PDBe 3LD7 · UniProt Q92EM7

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