MolNFT v1 · #70088 · protein
Crystal structure of the first plant urease from jack bean (canavalia ensiformis)
3LA4: “Crystal structure of the first plant urease from jack bean (canavalia ensiformis)”. X-ray diffraction, 3 ligands (ACN, NI, PO4), 5 pockets (best druggability 0.70). MolNFT v1 #70088 on GenesisL1: 3D structure, binding sites and…
- PDB
- 3LA4
- Type
- protein
- Length
- 837 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Urease
- EC
- 3.5.1.5
- UniProt
- P07374
- Ligands
- ACN, NI, PO4
- Pockets
- 5 · best druggability 0.70
Structure
x-ray diffraction · 1 distinct chain · 29% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Urease (EC 3.5.1.5) | protein | 837 | 29% helix, 23% strand | P07374 |
Ligands and binding sites
- ACN · Acetone · ligand
- NI · Nickel (II) ion · metal · 2 copies · chains A
- PO4 · Phosphate ion · ion · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 813 | 0.70 | 0.76 | 85 | empty |
| 2 | 122 | 0.50 | 0.80 | 24 | NI, PO4 |
| 3 | 131 | 0.41 | 0.75 | 15 | empty |
| 4 | 76 | 0.32 | 0.74 | 22 | empty |
| 5 | 72 | 0.30 | 0.73 | 15 | empty |
Modifications
Observed in the structure: 4 modified (artifact, carboxylation).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P07374
- Elsewhere: RCSB PDB 3LA4 · PDBe 3LA4 · UniProt P07374
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