MolNFT v1 · #69929 · protein

Structure of PI3K gamma with inhibitor

3L54 · Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic…: “Structure of PI3K gamma with inhibitor”. X-ray diffraction, 2 ligands (LXX, SO4), 14 pockets (best druggability 0.84). MolNFT v1 #69929 on GenesisL1: 3D structure, binding…

PDB: 3L54
Type: protein
Length: 837 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma isoform
EC: 2.7.1.153
UniProt: P48736
Ligands: LXX, SO4
Pockets: 14 · best druggability 0.84

Structure

x-ray diffraction · 1 distinct chain · 46% helix, 17% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma isoform (EC 2.7.1.153)	protein	837	46% helix, 17% strand	P48736

Ligands and binding sites

LXX · 6-(1H-pyrazolo[3,4-b]pyridin-5-yl)-4-pyridin-4-ylquinoline · ligand · chains A
SO4 · Sulfate ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

14 pockets found on a 1 Å grid, 7 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1041	0.84	0.85	71	empty
2	61	0.71	0.98	21	empty
3	416	0.68	0.80	49	LXX
4	396	0.66	0.79	53	empty
5	54	0.66	0.95	19	empty

Compared structures

3L54 · Structure of Pi3K gamma with inhibitor · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P48736
Elsewhere: RCSB PDB 3L54 · PDBe 3L54 · UniProt P48736

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.