MolNFT v1 · #69893 · protein

Pwwp domain of human bromodomain and phd finger containing protein 1

3L42 · Peregrin: “Pwwp domain of human bromodomain and phd finger containing protein 1”. X-ray diffraction, 1 ligand (UNX), 1 pocket (best druggability 0.31). MolNFT v1 #69893 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 3L42
Type: protein
Length: 127 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Peregrin
UniProt: P55201
Ligands: UNX
Pockets: 1 · best druggability 0.31

Structure

x-ray diffraction · 1 distinct chain · 35% helix, 24% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Peregrin	protein	127	35% helix, 24% strand	P55201

Ligands and binding sites

UNX · Unknown atom or ion · ion · 3 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	69	0.31	0.74	14	UNX

Compared structures

3L42 · PWWP domain of human bromodomain and PHD finger containing protein 1 · the same entry in another collection · chain A against A, TM-score 1.00
P55201 · AlphaFold monomer V2.0 prediction for peregrin (P55201) · a predicted model of the same protein · chain A against A, TM-score 0.95

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P55201
Elsewhere: RCSB PDB 3L42 · PDBe 3L42 · UniProt P55201

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