MolNFT v1 · #69431 · protein
Factor xa in complex with the inhibitor 3-methyl-1-(3-(5- oxo-4,5- dihydro-1H-1,2,4-triazol-3-YL)PHENYL)-6-(2'- (pyrrolidin-1-ylmethyl) biphenyl-4-yl)-5,6-dihydro-1H- PYRAZOLO[3,4-C]PYRIDIN-7(4H)-one
3KQE · Factor xa heavy chain: “Factor xa in complex with the inhibitor 3-methyl-1-(3-(5- oxo-4,5…”. X-ray diffraction, 2 ligands (LGM, NA), 2 pockets (best druggability 0.49). MolNFT v1 #69431 on GenesisL1: 3D structure, binding sites and…
- PDB
- 3KQE
- Type
- protein
- Length
- 286 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Factor xa heavy chain; Factor xa light chain
- EC
- 3.4.21.6
- UniProt
- P00742
- Ligands
- LGM, NA
- Pockets
- 2 · best druggability 0.49
Structure
x-ray diffraction · 2 distinct chains · 13% helix, 34% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Factor xa heavy chain (EC 3.4.21.6) | protein | 234 | 13% helix, 35% strand | P00742 |
| L | Factor xa light chain (EC 3.4.21.6) | protein | 52 | 13% helix, 31% strand | P00742 |
Ligands and binding sites
- LGM · 3-methyl-1-(3-(5-oxo-4,5-dihydro-1H-1,2,4-triazol-3-yl)phenyl)-6-(2'-(pyrrolidin-1-ylmethyl)biphenyl-4-yl)-5,6-dihydro-1H-pyrazolo[3,4-c]pyridin-7(4H)-one · ligand · chains A
- NA · Sodium ion · metal · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 137 | 0.49 | 0.79 | 29 | LGM |
| 2 | 168 | 0.45 | 0.75 | 29 | empty |
Interfaces
1 interface between chains.
- A–L · 945 Ų buried · 10 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 8 disulfide (disulfide).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00742
- Elsewhere: RCSB PDB 3KQE · PDBe 3KQE · UniProt P00742
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.