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MolNFT v1 · #69338 · protein

Carbonic anhydrase II H64C mutant in complex with an in situ formed triazole

3KNE · Carbonic anhydrase 2: “Carbonic anhydrase II H64C mutant in complex with an in situ formed triazole”. X-ray diffraction, 3 ligands (BE7, DAW, ZN), 1 pocket (best druggability 0.54). MolNFT v1 #69338 on GenesisL1: 3D structure…

PDB
3KNE
Type
protein
Length
257 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Carbonic anhydrase 2
EC
4.2.1.1
UniProt
P00918
Ligands
BE7, DAW, ZN
Pockets
1 · best druggability 0.54

Structure

x-ray diffraction · 1 distinct chain · 14% helix, 31% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
ACarbonic anhydrase 2 (EC 4.2.1.1)protein25714% helix, 31% strandP00918

Ligands and binding sites

  • BE7 · (4-carboxyphenyl)(chloro)mercury · ligand · chains A
  • DAW · N-[(S)-(1-{2-oxo-2-[(3-sulfanylpropyl)amino]ethyl}-1H-1,2,3-triazol-5-yl)(phenyl)methyl]-4-sulfamoylbenzamide · ligand · chains A
  • ZN · Zinc ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

PocketVolume (ų)DruggabilityBuriednessLining residuesInside
11410.540.8024DAW

Modifications

Observed in the structure: 1 covalent (covalent ligand).

Compared structures

  • 3KNE · Carbonic Anhydrase II H64C mutant in complex with an in situ formed triazole · the same entry in another collection · chain A against A, TM-score 1.00
  • P00918 · AlphaFold monomer V2.0 prediction for carbonic anhydrase 2 (P00918) · a predicted model of the same protein · chain A against A, TM-score 0.99

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