MolNFT v1 · #68957 · protein

Crystal structure of the 30S ribosomal protein S4E from thermoplasma acidophilum. northeast structural genomics consortium target TAR28.

3KBG: “Crystal structure of the 30S ribosomal protein S4E from thermoplasma acidophilum. northeast structural…”. X-ray diffraction, 2 pockets (best druggability 0.44). MolNFT v1 #68957 on GenesisL1: 3D structure, binding sites and pockets…

PDB: 3KBG
Type: protein
Length: 192 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: 30S ribosomal protein S4E
UniProt: Q56230
Pockets: 2 · best druggability 0.44

Structure

x-ray diffraction · 1 distinct chain · 15% helix, 43% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	30S ribosomal protein S4E	protein	192	15% helix, 43% strand	Q56230

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	71	0.44	0.80	15	empty
2	139	0.43	0.75	30	empty

Modifications

Observed in the structure: 6 modified (engineered).

Compared structures

3KBG · Crystal structure of the 30S ribosomal protein S4e from Thermoplasma acidophilum.… · the same entry in another collection · chain A against A, TM-score 1.00
Q56230 · AlphaFold monomer V2.0 prediction for 30S ribosomal protein S4E (Q56230) · a predicted model of the same protein · chain A against A, TM-score 0.92

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q56230
Elsewhere: RCSB PDB 3KBG · PDBe 3KBG · UniProt Q56230

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