Research workbench

Crystal structure of the 30S ribosomal protein S4E from thermoplasma acidophilum. northeast structural genomics consortium target TAR28.

Analyse Crystal structure of the 30S ribosomal protein S4E from thermoplasma… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3KBG
Type: protein
Length: 192 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: 30S ribosomal protein S4E
UniProt: Q56230
Pockets: 2 · best druggability 0.44

Structure

x-ray diffraction · 1 distinct chain · 15% helix, 43% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	30S ribosomal protein S4E	protein	192	15% helix, 43% strand	Q56230

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	71	0.44	0.80	15	empty
2	139	0.43	0.75	30	empty

Modifications

Observed in the structure: 6 modified (engineered).

Compared structures

3KBG · Crystal structure of the 30S ribosomal protein S4e from Thermoplasma acidophilum.… · the same entry in another collection · chain A against A, TM-score 1.00
Q56230 · AlphaFold monomer V2.0 prediction for 30S ribosomal protein S4E (Q56230) · a predicted model of the same protein · chain A against A, TM-score 0.92

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q56230
Elsewhere: RCSB PDB 3KBG · PDBe 3KBG · UniProt Q56230

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.