MolNFT v1 · #6878 · protein
Kdpg aldolase from escherichia COLI
1FQ0: “Kdpg aldolase from escherichia COLI”. X-ray diffraction, 9 pockets (best druggability 0.75). MolNFT v1 #6878 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1FQ0
- Type
- protein
- Length
- 639 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Kdpg aldolase
- EC
- 4.1.2.14
- UniProt
- P0A955
- Pockets
- 9 · best druggability 0.75
Structure
x-ray diffraction · 1 distinct chain · 43% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C | Kdpg aldolase (EC 4.1.2.14) | protein | 213 | 43% helix, 17% strand | P0A955 |
Ligands and binding sites
- CIT · Citric acid · additive · 3 copies · chains A, C, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
9 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 220 | 0.75 | 0.90 | 26 | empty |
| 2 | 128 | 0.69 | 0.90 | 28 | empty |
| 3 | 139 | 0.56 | 0.82 | 30 | CIT |
| 4 | 142 | 0.54 | 0.81 | 24 | CIT |
| 5 | 122 | 0.54 | 0.82 | 24 | CIT |
Interfaces
3 interfaces between chains.
- A–B · 597 Ų buried · 3 hydrogen bonds · protein-protein
- B–C · 595 Ų buried · 4 hydrogen bonds · protein-protein
- A–C · 579 Ų buried · 2 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0A955
- Elsewhere: RCSB PDB 1FQ0 · PDBe 1FQ0 · UniProt P0A955
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