MolNFT v1 · #68453 · protein
Crystal structure of L-methionine gamma-lyase from citrobacter freundii with norleucine
3JWB: “Crystal structure of L-methionine gamma-lyase from citrobacter freundii with norleucine”. X-ray diffraction, 1 ligand (NLE), 3 pockets (best druggability 0.57). MolNFT v1 #68453 on GenesisL1: 3D structure, binding sites and pockets…
- PDB
- 3JWB
- Type
- protein
- Length
- 396 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Methionine gamma-lyase
- EC
- 4.4.1.11
- UniProt
- Q84AR1
- Ligands
- NLE
- Pockets
- 3 · best druggability 0.57
Structure
x-ray diffraction · 1 distinct chain · 42% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Methionine gamma-lyase (EC 4.4.1.11) | protein | 396 | 42% helix, 16% strand | Q84AR1 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 214 | 0.57 | 0.79 | 36 | empty |
| 2 | 218 | 0.52 | 0.77 | 30 | NLE |
| 3 | 73 | 0.35 | 0.76 | 15 | empty |
Modifications
Observed in the structure: 2 modified (cofactor, oxidation).
Compared structures
- 3JWB · Crystal structure of L-methionine gamma-lyase from Citrobacter freundii with norleucine · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q84AR1
- Elsewhere: RCSB PDB 3JWB · PDBe 3JWB · UniProt Q84AR1
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