MolNFT v1 · #68180 · protein

Insight into three-dimensional structure of maize chlorotic mottle virus revealed by single particle analysis

3JB8 · Coat protein: “Insight into three-dimensional structure of maize chlorotic mottle virus revealed by single particle analysis”. Electron microscopy, 14 pockets (best druggability 0.77). MolNFT v1 #68180 on GenesisL1: 3D structure…

PDB: 3JB8
Type: protein
Length: 550 residues
Chains: 3
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Coat protein
UniProt: I6QQC4
Pockets: 14 · best druggability 0.77

Structure

electron microscopy · 3 distinct chains · 11% helix, 32% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Coat protein	protein	185	11% helix, 32% strand	I6QQC4
B	Coat protein	protein	182	12% helix, 32% strand	I6QQC4
C	Coat protein	protein	183	11% helix, 32% strand	I6QQC4

Pockets

14 pockets found on a 1 Å grid, 9 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	88	0.77	0.98	26	empty
2	79	0.77	0.98	24	empty
3	72	0.76	0.98	22	empty
4	539	0.70	0.79	38	empty
5	79	0.61	0.90	23	empty

Interfaces

3 interfaces between chains.

B–C · 769 Å² buried · 7 hydrogen bonds · protein-protein
A–B · 762 Å² buried · 7 hydrogen bonds · protein-protein
A–C · 760 Å² buried · 8 hydrogen bonds · protein-protein

Compared structures

3JB8 · Insight into Three-dimensional structure of Maize Chlorotic Mottle Virus Revealed by… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt I6QQC4
Elsewhere: RCSB PDB 3JB8 · PDBe 3JB8 · UniProt I6QQC4

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