Research workbench
Insight into three-dimensional structure of maize chlorotic mottle virus revealed by single particle analysis
Analyse Insight into three-dimensional structure of maize chlorotic mottle virus… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3JB8
- Type
- protein
- Length
- 550 residues
- Chains
- 3
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Coat protein
- UniProt
- I6QQC4
- Pockets
- 14 · best druggability 0.77
Structure
electron microscopy · 3 distinct chains · 11% helix, 32% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Coat protein | protein | 185 | 11% helix, 32% strand | I6QQC4 |
| B | Coat protein | protein | 182 | 12% helix, 32% strand | I6QQC4 |
| C | Coat protein | protein | 183 | 11% helix, 32% strand | I6QQC4 |
Pockets
14 pockets found on a 1 Å grid, 9 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 88 | 0.77 | 0.98 | 26 | empty |
| 2 | 79 | 0.77 | 0.98 | 24 | empty |
| 3 | 72 | 0.76 | 0.98 | 22 | empty |
| 4 | 539 | 0.70 | 0.79 | 38 | empty |
| 5 | 79 | 0.61 | 0.90 | 23 | empty |
Interfaces
3 interfaces between chains.
- B–C · 769 Ų buried · 7 hydrogen bonds · protein-protein
- A–B · 762 Ų buried · 7 hydrogen bonds · protein-protein
- A–C · 760 Ų buried · 8 hydrogen bonds · protein-protein
Compared structures
- 3JB8 · Insight into Three-dimensional structure of Maize Chlorotic Mottle Virus Revealed by… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt I6QQC4
- Elsewhere: RCSB PDB 3JB8 · PDBe 3JB8 · UniProt I6QQC4
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