MolNFT v1 · #6788 · protein
Refined crystal structure of spinach ferredoxin reductase at 1.7 ångströms resolution: oxidized, reduced, and 2'- phospho-5'-AMP bound states
1FND · Ferredoxin-NADP+ reductase: “Refined crystal structure of spinach ferredoxin reductase at 1.7 ångströms resolution: oxidized, reduced, and…”. X-ray diffraction, 3 ligands (FAD, A2P, SO4), 2 pockets (best druggability 0.59). MolNFT…
- PDB
- 1FND
- Type
- protein
- Length
- 296 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ferredoxin-NADP+ reductase
- EC
- 1.18.1.2
- UniProt
- P00455
- Ligands
- FAD, A2P, SO4
- Pockets
- 2 · best druggability 0.59
Structure
x-ray diffraction · 1 distinct chain · 25% helix, 31% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ferredoxin-NADP+ reductase (EC 1.18.1.2) | protein | 296 | 25% helix, 31% strand | P00455 |
Ligands and binding sites
- FAD · Flavin-adenine dinucleotide · ligand · chains A
- A2P · Adenosine-2'-5'-diphosphate · ligand · chains A
- SO4 · Sulfate ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 307 | 0.59 | 0.77 | 49 | FAD, A2P |
| 2 | 57 | 0.26 | 0.73 | 17 | empty |
Compared structures
- 1FND · Refined crystal structure of spinach ferredoxin reductase at 1.7 ångströms resolution… · the same entry in another collection · chain A against A, TM-score 1.00
- P00455 · AlphaFold monomer V2.0 prediction for ferredoxin--NADP reductase, chloroplastic (P00455) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00455
- Elsewhere: RCSB PDB 1FND · PDBe 1FND · UniProt P00455
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