MolNFT v1 · #67345 · protein
Crystal structure of UCH37
3IHR · Ubiquitin carboxyl-terminal hydrolase isozyme L5: “Crystal structure of UCH37”. X-ray diffraction, 1 ligand (NA), 5 pockets (best druggability 0.45). MolNFT v1 #67345 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 3IHR
- Type
- protein
- Length
- 282 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ubiquitin carboxyl-terminal hydrolase isozyme L5
- EC
- 3.4.19.12
- UniProt
- Q9Y5K5
- Ligands
- NA
- Pockets
- 5 · best druggability 0.45
Structure
x-ray diffraction · 1 distinct chain · 49% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ubiquitin carboxyl-terminal hydrolase isozyme L5 (EC 3.4.19.12) | protein | 282 | 49% helix, 17% strand | Q9Y5K5 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 85 | 0.45 | 0.80 | 19 | empty |
| 2 | 53 | 0.42 | 0.83 | 14 | empty |
| 3 | 59 | 0.41 | 0.82 | 15 | empty |
| 4 | 86 | 0.40 | 0.77 | 15 | empty |
| 5 | 57 | 0.30 | 0.76 | 12 | empty |
Modifications
Observed in the structure: 8 modified (engineered).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9Y5K5
- Elsewhere: RCSB PDB 3IHR · PDBe 3IHR · UniProt Q9Y5K5
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