MolNFT v1 · #66837 · protein

The crystal structure of pf-8, the DNA polymerase accessory subunit from kaposi S sarcoma-associated herpesvirus

3I2M · ORF59: “The crystal structure of pf-8, the DNA polymerase accessory subunit from kaposi S sarcoma-associated…”. X-ray diffraction, 2 pockets (best druggability 0.41). MolNFT v1 #66837 on GenesisL1: 3D structure, binding sites and…

PDB: 3I2M
Type: protein
Length: 288 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: ORF59
UniProt: Q77ZG5
Pockets: 2 · best druggability 0.41

Structure

x-ray diffraction · 1 distinct chain · 16% helix, 41% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
X	ORF59	protein	288	16% helix, 41% strand	Q77ZG5

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	128	0.41	0.76	26	empty
2	52	0.25	0.73	16	empty

Modifications

Observed in the structure: 4 modified (engineered).

Compared structures

3I2M · The Crystal Structure of PF-8, the DNA Polymerase Accessory Subunit from Kaposi s… · the same entry in another collection · chain X against X, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q77ZG5
Elsewhere: RCSB PDB 3I2M · PDBe 3I2M · UniProt Q77ZG5

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