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The crystal structure of pf-8, the DNA polymerase accessory subunit from kaposi S sarcoma-associated herpesvirus
Analyse The crystal structure of pf-8, the DNA polymerase accessory subunit from kaposi… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3I2M
- Type
- protein
- Length
- 288 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- ORF59
- UniProt
- Q77ZG5
- Pockets
- 2 · best druggability 0.41
Structure
x-ray diffraction · 1 distinct chain · 16% helix, 41% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| X | ORF59 | protein | 288 | 16% helix, 41% strand | Q77ZG5 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 128 | 0.41 | 0.76 | 26 | empty |
| 2 | 52 | 0.25 | 0.73 | 16 | empty |
Modifications
Observed in the structure: 4 modified (engineered).
Compared structures
- 3I2M · The Crystal Structure of PF-8, the DNA Polymerase Accessory Subunit from Kaposi s… · the same entry in another collection · chain X against X, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q77ZG5
- Elsewhere: RCSB PDB 3I2M · PDBe 3I2M · UniProt Q77ZG5
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