MolNFT v1 · #66777 · protein
Crystal structure of gtb C80S/C196S/C209S + udp
3I0I · Abo glycosyltransferase: “Crystal structure of gtb C80S/C196S/C209S + udp”. X-ray diffraction, 1 ligand (UDP), 2 pockets (best druggability 0.60). MolNFT v1 #66777 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 3I0I
- Type
- protein
- Length
- 272 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Abo glycosyltransferase
- EC
- 2.4.1.37
- UniProt
- Q70V26
- Ligands
- UDP
- Pockets
- 2 · best druggability 0.60
Structure
x-ray diffraction · 1 distinct chain · 35% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| X | Abo glycosyltransferase (EC 2.4.1.37) | protein | 272 | 35% helix, 20% strand | Q70V26 |
Ligands and binding sites
- UDP · Uridine-5'-diphosphate · ligand · chains X
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 341 | 0.60 | 0.77 | 32 | UDP |
| 2 | 56 | 0.35 | 0.77 | 17 | empty |
Compared structures
- 3I0I · Crystal structure of GTB C80S/C196S/C209S + UDP · the same entry in another collection · chain X against X, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q70V26
- Elsewhere: RCSB PDB 3I0I · PDBe 3I0I · UniProt Q70V26
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